Publications

(†) denotes equal contribution

(*) denotes correspondance

denotes journal

denotes conference

denotes preprint

2025

  1. JMB
    DOGpred.jpg
    DOGpred: A Novel Deep Learning Framework for Accurate Identification of Human O-linked Threonine Glycosylation Sites
    Ki Wook LeeNhat Truong Pham , Hye Jung Min , Hyun Woo Park , Ji Won Lee , Han-En Lo , Na Young Kwon , Jimin Seo , Illia Shaginyan , Heeje Cho , Leyi WeiBalachandran Manavalan , and Young-Jun Jeon
  2. OE
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    Hydraulic performance and wave transmission through nature-inspired perforated hollow-base piles breakwater
    Duong Tran Anh , Trinh Cong Dan , Phong Nguyen Thanh , Ahad Hasan Tanim , David Wright , Nhat Truong Pham , and Nguyen Anh Tien
  3. HSJ
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    Enhancing daily runoff prediction in hydropower basins with a voting ensemble model using historical data
    Ngoc Anh LE , Phong Nguyen ThanhNhat Truong Pham , Le Quoc Huy , Son T. Mai , Duc Dung Do , Huy Anh Nguyen , and Duong Tran Anh
  4. Preprint
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    Advances in RNA secondary structure prediction and RNA modifications: Methods, data, and applications
    Shu YangNhat Truong PhamZiyang Li , Jae Young Baik , Joseph Lee , Tianhua Zhai , Weicheng Yu , Bojian Hou , Tianqi Shang , Weiqing He , Duy Duong-TranMayur Naik , and Li Shen
    2025
  5. Leveraging deep transfer learning and explainable AI for accurate COVID-19 diagnosis: Insights from a multi-national chest CT scan study
    Nhat Truong Pham , Jinsol Ko , Masaud ShahRajan RakkiyappanHyun Goo Woo , and Balachandran Manavalan

2024

  1. Preprint
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    QTSeg: A Query Token-Based Architecture for Efficient 2D Medical Image Segmentation
    2024
  2. Preprint
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    Multi-modal fusion in speech emotion recognition: A comprehensive review of methods and technologies
    Nhut Minh Nguyen , Thanh Trung Nguyen , Phuong-Nam TranChee Peng LimNhat Truong Pham , and Duc Ngoc Minh Dang
    2024
  3. JMB
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    MST-m6A: A Novel Multi-Scale Transformer-based Framework for Accurate Prediction of m6A Modification Sites Across Diverse Cellular Contexts
    Qiaosen Su , Le Thi Phan , Nhat Truong PhamLeyi Wei , and Balachandran Manavalan
  4. HuBERT-CLAP: Contrastive Learning-Based Multimodal Emotion Recognition using Self-Alignment Approach
    Long H. NguyenNhat Truong PhamMustaqeem KhanAlice Othmani , and Abdulmotaleb El Saddik
  5. Federated Learning with U-Net for Brain Tumor Segmentation: Impact of Client Numbers and Data Distribution
    Thu Thuy LeNhat Truong PhamPhuong-Nam Tran , and Duc Ngoc Minh Dang
  6. Towards Real-time Vietnamese Traffic Sign Recognition on Embedded Systems
    Phuong-Nam TranNhat Truong Pham , Nam Pham Van Hai , Duc Tai Phan , Tuan Cuong Nguyen , and Duc Ngoc Minh Dang
  7. Mol2Lang-VLM: Vision- and Text-Guided Generative Pre-trained Language Models for Advancing Molecule Captioning through Multimodal Fusion
  8. Lang2Mol-Diff: A Diffusion-Based Generative Model for Language-to-Molecule Translation Leveraging SELFIES Molecular String Representation
  9. HOTGpred: Enhancing human O-linked threonine glycosylation prediction using integrated pretrained protein language model-based features and multi-stage feature selection approach
    Nhat Truong Pham , Ying ZhangRajan Rakkiyappan , and Balachandran Manavalan
  10. JMB
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    mACPpred 2.0: Stacked Deep Learning for Anticancer Peptide Prediction with Integrated Spatial and Probabilistic Feature Representations
    Vinoth Kumar SangarajuNhat Truong PhamLeyi Wei , Xue Yu , and Balachandran Manavalan
  11. SEP-AlgPro: An efficient allergen prediction tool utilizing traditional machine learning and deep learning techniques with protein language model features
    Shaherin BasithNhat Truong PhamBalachandran Manavalan , and Gwang Lee
  12. EMA
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    Predicting drought stress under climate change in the Southern Central Highlands of Vietnam
    Phong Nguyen Thanh , Xuan Ai Tien Van , Au Nguyen Hai , Chinh Le Cong , Alexandre S GagnonNhat Truong PhamDuong Tran Anh , and Vuong Nguyen Dinh
  13. Meta-2OM: A multi-classifier meta-model for the accurate prediction of RNA 2’-O-methylation sites in human RNA
    Md Harun-Or-Roshid , Nhat Truong PhamBalachandran Manavalan , and Hiroyuki Kurata
    PLoS ONE, 2024
  14. ac4C-AFL: A high-precision identification of human mRNA N4-acetylcytidine sites based on adaptive feature representation learning
    Nhat Truong Pham , Annie Terrina Terrance , Young-Jun JeonRajan Rakkiyappan , and Balachandran Manavalan
  15. Innovative Multi-Modal Control for Surveillance Spider Robot: An Integration of Voice and Hand Gesture Recognition
    Dang Khoa Phan , Phuong-Nam TranNhat Truong Pham , Tra Huong Thi Le , and Duc Ngoc Minh Dang
  16. Deep Learning-Based Automated Cashier System for Bakeries
    Nam Van Hai Phan , Tha Thanh Le , Tuan Phu Phan , Thu Thuy LePhuong-Nam TranNhat Truong Pham , and Duc Ngoc Minh Dang
  17. BiB
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    H2Opred: a robust and efficient hybrid deep learning model for predicting 2’-O-methylation sites in human RNA
  18. Enhanced sliding mode controller design via meta-heuristic algorithm for robust and stable load frequency control in multi-area power systems
    Anh-Tuan Tran , Minh Phuc Duong , Nhat Truong Pham , and Jae Woong Shim
  19. BiB
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    Advancing the accuracy of SARS-CoV-2 phosphorylation site detection via meta-learning approach
    Nhat Truong Pham , Le Thi Phan , Jimin Seo , Yeonwoo Kim , Minkyung Song , Sukchan Lee , Young-Jun Jeon , and Balachandran Manavalan

2023

  1. Comparative analysis of multi-loss functions for enhanced multi-modal speech emotion recognition
    Phuong-Nam Tran , Thuy-Duong Thi Vu , Nhat Truong Pham , Hanh Dang-Ngoc , and Duc Ngoc Minh Dang
  2. SER-Fuse: An Emotion Recognition Application Utilizing Multi-Modal, Multi-Lingual, and Multi-Feature Fusion
    Nhat Truong Pham* , Le Thi Phan , Duc Ngoc Minh Dang , and Balachandran Manavalan
  3. Multi-modal Speech Emotion Recognition: Improving Accuracy Through Fusion of VGGish and BERT Features with Multi-head Attention
    Phuong-Nam Tran , Thuy-Duong Thi Vu , Duc Ngoc Minh DangNhat Truong Pham , and Anh-Khoa Tran
  4. ADP-Fuse: A novel dual layer machine learning predictor to identify antidiabetic peptides and diabetes types using multiview information
    Shaherin BasithNhat Truong PhamMinkyung Song , Gwang Lee , and Balachandran Manavalan
  5. SERVER: Multi-modal Speech Emotion Recognition using TransformeR-based and Vision-based Embeddings
    Nhat Truong PhamDuc Ngoc Minh Dang , Bich Hong Ngoc Pham , and Sy Dzung Nguyen
  6. DrugormerDTI: Drug Graphormer for drug–target interaction prediction
    Jiayue Hu , Wang Yu , Chao Pang , Junru JinNhat Truong PhamBalachandran Manavalan , and Leyi Wei
  7. KBS
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    AAD-Net: Advanced end-to-end signal processing system for human emotion detection & recognition using attention-based deep echo state network
    Mustaqeem KhanAbdulmotaleb El Saddik , Fahd Saleh Alotaibi , and Nhat Truong Pham
  8. Towards an efficient machine learning model for financial time series forecasting
    Arun Kumar , Tanya Chauhan , Srinivasan NatesanNhat Truong PhamNgoc Duy Nguyen , and Chee Peng Lim
  9. Hybrid data augmentation and deep attention-based dilated convolutional-recurrent neural networks for speech emotion recognition
  10. Pretoria: An effective computational approach for accurate and high-throughput identification of CD8+ t-cell epitopes of eukaryotic pathogens
    Phasit Charoenkwan , Nalini Schaduangrat , Nhat Truong PhamBalachandran Manavalan , and Watshara Shoombuatong
  11. An exploratory simulation study and prediction model on human brain behavior and activity using an integration of deep neural network and biosensor Rabi antenna
    Nhat Truong Pham , Montree Bunruangses , Phichai Youplao , Anita Garhwal , Kanad Ray , Arup Roy , Sarawoot Boonkirdram , Preecha Yupapin , Muhammad Arif Jalil , Jalil Ali , Shamim KaiserMufti MahmudSaurav Mallik , and Zhongming Zhao
    Heliyon, 2023
  12. Speech emotion recognition using overlapping sliding window and Shapley additive explainable deep neural network
    Nhat Truong PhamSy Dzung Nguyen , Vu Song Thuy Nguyen , Bich Ngoc Hong Pham , and Duc Ngoc Minh Dang
  13. Fruit-CoV: An efficient vision-based framework for speedy detection and diagnosis of SARS-CoV-2 infections through recorded cough sounds
    Long H. NguyenNhat Truong Pham†* , Van Huong Do , Liu Tai Nguyen , Thanh Tin NguyenHai NguyenNgoc Duy NguyenThanh Thi NguyenSy Dzung Nguyen , Asim Bhatti , and Chee Peng Lim
  14. Towards designing a generic and comprehensive deep reinforcement learning framework
    Ngoc Duy NguyenThanh Thi NguyenNhat Truong PhamHai Nguyen , Dang Tu Nguyen , Thanh Dang Nguyen , Chee Peng Lim , Michael Johnstone , Asim Bhatti , Douglas Creighton , and Saeid Nahavandi

2022

  1. Speech emotion recognition: A brief review of multi-modal multi-task learning approaches
    Nhat Truong PhamAnh-Tuan Tran , Bich Ngoc Hong Pham , Hanh Dang-Ngoc , Sy Dzung Nguyen , and Duc Ngoc Minh Dang
  2. Priority-Based Uplink Raw Slot Utilization in the IEEE 802.11 ah Networks
    Duc Ngoc Minh Dang , Anh Khoa Tran , and Nhat Truong Pham
  3. vieCap4H Challenge 2021: Vietnamese Image Captioning for Healthcare Domain using Swin Transformer and Attention-based LSTM
    Thanh Tin Nguyen , Long H. Nguyen , Nhat Truong Pham* , Liu Tai Nguyen , Van Huong Do , Hai Nguyen , and Ngoc Duy Nguyen
  4. ATC
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    Space-Frequency Diversity based MAC protocol for IEEE 802.11 ah networks
    Duc Ngoc Minh Dang , Van Thau Tran , Hoang Lam Nguyen , Nhat Truong Pham , Anh Khoa Tran , and Ngoc-Hanh Dang
  5. Key Information Extraction from Mobile-Captured Vietnamese Receipt Images using Graph Neural Networks Approach
    Van Dung Pham , Le Quan Nguyen , Nhat Truong Pham , Bao Hung Nguyen , Duc Ngoc Minh Dang , and Sy Dzung Nguyen
  6. Vietnamese Scene Text Detection and Recognition using Deep Learning: An Empirical Study
    Nhat Truong Pham , Van Dung Pham , Qui Nguyen-Van , Bao Hung Nguyen , Duc Ngoc Minh Dang , and Sy Dzung Nguyen
  7. Safety Message Broadcast Reliability Enhancement MAC protocol in VANETs
    Duc Ngoc Minh Dang , Anh Khoa Tran , Nhat Truong Pham , Khanh Duong Tran , and Hanh Ngoc Dang
  8. A deep learning approach for detecting drill bit failures from a small sound dataset
    Thanh Tran , Nhat Truong Pham , and Jan Lundgren
  9. JCC
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    Improving ligand-ranking of AutoDock Vina by changing the empirical parameters
    T Ngoc Han PhamTrung Hai Nguyen , Nguyen Minh Tam , Thien Y. Vu , Nhat Truong Pham , Nguyen Truong Huy , Binh Khanh Mai , Nguyen Thanh Tung , Minh Quan Pham , Van V. Vu , and Son Tung Ngo
  10. Determination of the optimal number of clusters: a fuzzy-set based method
    Sy Dzung Nguyen , Vu Song Thuy Nguyen , and Nhat Truong Pham
  11. HCILab at Memotion 2.0 2022: Analysis of sentiment, emotion and intensity of emotion classes from meme images using single and multi modalities
    Thanh Tin NguyenNhat Truong PhamNgoc Duy NguyenHai Nguyen , Long H. Nguyen , and Yong-Guk Kim
    In DE-FACTIFY@ AAAI, 2022

2021

  1. Separate sound into STFT frames to eliminate sound noise frames in sound classification
    Thanh Tran , Kien Bui Huy , Nhat Truong Pham , Marco Carratù , Consolatina Liguori , and Jan Lundgren

2020

  1. A method upon deep learning for speech emotion recognition
    Nhat Truong PhamDuc Ngoc Minh Dang , and Sy Dzung Nguyen